• F Lin, L Jiang, Y Liu, Y Lv, H Dai, H. Zhao. Genome-wide identification of housekeeping genes in maize. Plant Molecular Biology 2014, 86, 543-554
• Lucas, C.J., Zhao, H., Schneerman, M. and Moose, S.P. 2012. Genomic changes in response to 110 cycles of selection for seed protein and oil concentration in maize. Book chapter in Seed Genomics. P. Becraft ed., Wiley
• Feng Lin,Huabing Bao,Yuhe Liu, Jun Yang, Huixue Dai, and Han Zhao. Genome-wide discovery of maize tissue-specific genes in maize. Plant Molecular Biology Reports. 2016.
• Lv Y, Liang Z, Ge M, Qi WC, Zhang TF, Lin F, Peng Z, Zhao H. Genome-wide identification and functional prediction of nitrogen-responsive intergenic and intronic long non-coding RNAs in maize (Zea mays L.). BMC Genomics, 2016, 17:350
• Lv Y, Liu Y, Zhao H. mInDel: a high-throughput and efficient pipeline for genome-wide InDel marker development. BMC Genomics, 2016, 17:290
• Qi WC, Lin F, Liu Y, Huang B, Cheng J, Zhang W, Zhao H. High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica. BMC Plant Biology 2016, 16:139
• Jiang L, Ge M, Zhao H, Zhang T. Analysis of heterosis and quantitative trait loci for kernel shape related traits using triple testcross population in maize. PLoS One. 2015;10(4), e0124779
• Pei du, Lifang Zhuang, Yanzhi Wang,Li Yuan, Qing Wang, Danrui Wang, dawadondup Dawadondup, Lijun Tan, Jan Shen, Haibin Xu, HanZhao, Chenggen Chu, Zengjun Qi . Development of oligonucleotides and multiplex probes for quick and accurate identification of wheat and Thinopyrum bessarabicum chromosomes Genome. Published on the web 14 September 2016, 10.1139/gen-2016-0095
• Li, C., Qiao, Z., Qi, W., Wang, Q., Yuan, Y., Yang, X., Tang, Y., Mei, B., Lv, Y., Zhao, H., Xiao, H., Song, R.(2015). Genome-wide characterization of cis-acting DNA targets reveals the transcriptional regulatory framework of Opaque2 in maize. Plant Cell 27: 532–545
• Wei Zhang, Nelson Garcia, Yaping Feng, Han Zhao, Joachim Messing, Genome-wide histone acetylation correlates with active transcription in maize, Genomics, Volume 106, Issue 4, October 2015, Pages 214-220
• Zhang TF, Ge M, Ye X, Bughrara SS, Zhao H. Construction of a linkage map for quantitative trait loci associated with economically important traits in creeping bentgrass (Agrostis stolonifera L.). Euphytica 2012 188: 347-360
• Zhao H., S.S. Bughrara, and Jose Alberto Oliveira 2009. Genetic relationships in snow mold resistant clones of creeping bentgrass. Plant Breeding, DOI: 10.1111/j.1439-0523.2009.01690.x.